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SRX4546389: GSM3330059: CD4 XBP1 knock out, replicate 4; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 44.4M spots, 2.3G bases, 1.4Gb downloads

Submitted by: NCBI (GEO)
Study: IRE1a-XBP1 controls T cell function in ovarian cancer by regulating mitochondrial activity
show Abstracthide Abstract
Tumors evade immune control by creating hostile microenvironments that perturb T cell metabolism and effector function. However, it remains unclear how intratumoral T cells integrate and interpret metabolic stress signals. Here we report that ovarian cancer (OvCa), an aggressive malignancy refractory to standard treatments and current immunotherapies, induces Endoplasmic Reticulum (ER) stress and activation of the IRE1a-XBP1 arm of the Unfolded Protein Response (UPR)10,11 in T cells to control their mitochondrial respiration and anti-tumor function. XBP1 upregulation in T cells isolated from human OvCa specimens was associated with decreased intratumoral T cell infiltration and reduced IFNG mRNA expression. Malignant ascites fluid obtained from OvCa patients inhibited glucose uptake and caused N-linked protein glycosylation defects in T cells, leading to IRE1a/XBP1-driven suppression of mitochondrial activity and IFN-? production. Mechanistically, XBP1 induction limited the influx of glutamine necessary to sustain T cell mitochondrial respiration under glucose-deprived conditions by regulating the abundance of glutamine carriers. Restoring N-linked protein glycosylation, abrogating IRE1a-XBP1 activation or enforcing expression of glutamine transporters enhanced mitochondrial respiration in human T cells exposed to OvCa ascites. XBP1-deficient T cells in the metastatic OvCa milieu exhibited global transcriptional reprogramming and improved effector capacity. Accordingly, OvCa-bearing mice lacking XBP1 selectively in T cells demonstrated superior anti-tumor immunity, delayed malignant progression and increased overall survival. Therefore, controlling ER stress or targeting IRE1a-XBP1 signaling may help restore T cell metabolic fitness and anti-tumor capacity in cancer hosts. Overall design: RNA-seq in XBP1 WT and KO CD4 tumor infiltrating Tcells
Sample: CD4 XBP1 knock out, replicate 4
SAMN09809270 • SRS3663911 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Tumor infiltrating CD4+ T cells sorted from peritoneal wash samples of Xbp1f/f (WT) or Xbp1f/f Cd4cre (KO) female mice bearing aggressive ID8-Defb29/Vegf-A ovarian cancer for 20 days. miRVana miRNA isolation kit (Ambion) and RNeasy MinElute kit (Qiagen) were used for total RNA isolation and concentration Library preparation was performed using the UltraLowRNAseq RNA Library Prep Kit
Experiment attributes:
GEO Accession: GSM3330059
Links:
Runs: 1 run, 44.4M spots, 2.3G bases, 1.4Gb
Run# of Spots# of BasesSizePublished
SRR768589344,369,1562.3G1.4Gb2018-10-18

ID:
6151226

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